Data Set Release Disclaimer

The following lists links to a variety of data sets used in publications coming out of the Eckert lab. When possible they are grouped by publication. Feel free to use the data as needed. We only ask that you acknowledge the source of the data - either the original publication or this site.

Sunday, November 13, 2011

Loblolly pine linkage map


Eckert et al.: Figure 6. Linkage map with outliers
The linkage map described in several publications out of the Neale Lab can be found by following the links provided here. This map has played a part in at least three publications by Andrew J. Eckert:

(1) Eckert, A. J., J. van Heerwaarden, J. L. Wegrzyn, C. D. Nelson, J. Ross-Ibarra, S. C. González-Martínez and D. B. Neale. 2010. Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae). Genetics 185: 969-982.
(2) Eckert, A. J., A. D. Bower, S. C. González-Martínez, J. L. Wegrzyn, G. Coop and D. B. Neale. 2010. Back to nature: Ecological genomics of loblolly pine (Pinus taeda, Pinaceae). Molecular Ecology 19: 3789-3805.
(3) Eckert, A. J., J. L. Wegrzyn, W. P. Cumbie, B. Goldfarb, D. A. Huber, V. Tolstikov, O. Fiehn, and D. B. Neale. 2012. Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome. New Phytologist 193: 890-902.

The map is available as an Excel file by clicking here. The file contains map information for the latest round of linkage mapping, as well as nucleotide diversity and divergence summaries for loci containing these markers.

If you use this map, please cite the first publication and its accession number for the TreeGenes CMap database (TG091). More information about the SNP markers residing on the map can be found using the DiversiTree database.

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